Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL20A1Q9P218 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
COL20A1Q9P218 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL20A1Q9P218 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.33
COL20A1Q9P218 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL20A1Q9P218 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL20A1Q9P218 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.08■□□□□ 0.33
COL20A1Q9P218 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.08■□□□□ 0.33
COL20A1Q9P218 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.08■□□□□ 0.33
COL20A1Q9P218 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL20A1Q9P218 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL20A1Q9P218 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL20A1Q9P218 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 AC003102.2-201ENST00000589195 1469 ntBASIC17.08■□□□□ 0.32
COL20A1Q9P218 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.08■□□□□ 0.32
COL20A1Q9P218 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 AC002472.3-201ENST00000640124 621 ntBASIC17.08■□□□□ 0.32
COL20A1Q9P218 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.08■□□□□ 0.32
COL20A1Q9P218 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 AL109954.1-202ENST00000564051 2148 ntBASIC17.08■□□□□ 0.32
COL20A1Q9P218 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL20A1Q9P218 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC011270.2-201ENST00000624293 2550 ntBASIC17.07■□□□□ 0.32
COL20A1Q9P218 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 WASH3P-207ENST00000560956 1394 ntBASIC17.07■□□□□ 0.32
COL20A1Q9P218 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 NKAIN1P1-201ENST00000435754 582 ntBASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC044849.1-201ENST00000519737 1188 ntBASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC126915.1-201ENST00000522847 1038 ntBASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.07■□□□□ 0.32
COL20A1Q9P218 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL20A1Q9P218 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.06■□□□□ 0.32
COL20A1Q9P218 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL20A1Q9P218 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms