Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CHMP1AQ9HD42 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 MIR940-201ENST00000401276 94 ntBASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CHMP1AQ9HD42 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 REXO1L1P-201ENST00000379010 6598 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AL139385.1-201ENST00000611744 3272 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SPCS2P4-201ENST00000436160 681 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AC079140.1-201ENST00000508039 487 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms