Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AC010327.5-201ENST00000586923 3061 ntBASIC13.42□□□□□ -0.26
NKX3-1Q99801 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX3-1Q99801 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
NKX3-1Q99801 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 AP001267.2-201ENST00000532619 2086 ntBASIC13.41□□□□□ -0.26
NKX3-1Q99801 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.41□□□□□ -0.26
NKX3-1Q99801 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 AC005237.2-201ENST00000434368 219 ntBASIC13.41□□□□□ -0.26
NKX3-1Q99801 KRT18P64-201ENST00000434946 1219 ntBASIC13.41□□□□□ -0.26
NKX3-1Q99801 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 AC004835.2-201ENST00000603762 682 ntBASIC13.41□□□□□ -0.26
NKX3-1Q99801 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 AC003101.2-201ENST00000612557 442 ntBASIC13.41□□□□□ -0.26
NKX3-1Q99801 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
NKX3-1Q99801 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX3-1Q99801 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
NKX3-1Q99801 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
NKX3-1Q99801 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms