Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
NKX2-3Q8TAU0 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
NKX2-3Q8TAU0 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 CICP24-201ENST00000605464 2705 ntBASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 BTBD6P1-201ENST00000412176 1267 ntBASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 AC004898.1-201ENST00000451057 766 ntBASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 AC091804.1-201ENST00000486888 567 ntBASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 ZBED1P1-201ENST00000502364 1930 ntBASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 AC012508.2-201ENST00000567613 1472 ntBASIC17.95■□□□□ 0.46
NKX2-3Q8TAU0 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ACTG1P17-201ENST00000558391 1119 ntBASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 AC025279.2-201ENST00000569730 653 ntBASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 AL596257.1-201ENST00000641463 2694 ntBASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
NKX2-3Q8TAU0 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms