Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
RFX3P48380 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.44□□□□□ -0.1
RFX3P48380 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.44□□□□□ -0.1
RFX3P48380 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 AC023024.2-201ENST00000623561 1993 ntBASIC14.44□□□□□ -0.1
RFX3P48380 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.44□□□□□ -0.1
RFX3P48380 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.44□□□□□ -0.1
RFX3P48380 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
RFX3P48380 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.44□□□□□ -0.1
RFX3P48380 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.44□□□□□ -0.1
RFX3P48380 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.44□□□□□ -0.1
RFX3P48380 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
RFX3P48380 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 AL121723.1-201ENST00000445194 1519 ntBASIC14.44□□□□□ -0.1
RFX3P48380 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.44□□□□□ -0.1
RFX3P48380 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
RFX3P48380 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 BTBD7P1-201ENST00000447253 1453 ntBASIC14.44□□□□□ -0.1
RFX3P48380 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RFX3P48380 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.44□□□□□ -0.1
RFX3P48380 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.44□□□□□ -0.1
RFX3P48380 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.43□□□□□ -0.1
RFX3P48380 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.43□□□□□ -0.1
RFX3P48380 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.43□□□□□ -0.1
RFX3P48380 AC114501.2-201ENST00000439631 535 ntBASIC14.43□□□□□ -0.1
RFX3P48380 UGT1A2P-201ENST00000454886 866 ntBASIC14.43□□□□□ -0.1
RFX3P48380 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.43□□□□□ -0.1
RFX3P48380 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
RFX3P48380 AC011467.4-201ENST00000594891 528 ntBASIC14.43□□□□□ -0.1
RFX3P48380 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.43□□□□□ -0.1
RFX3P48380 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.43□□□□□ -0.1
RFX3P48380 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.43□□□□□ -0.1
RFX3P48380 AC138969.2-201ENST00000532739 9932 ntBASIC14.43□□□□□ -0.1
RFX3P48380 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
RFX3P48380 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RFX3P48380 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms