Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC138969.2-201ENST00000532739 9932 ntBASIC12.59□□□□□ -0.39
CDX1P47902 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 MTND6P24-201ENST00000440466 518 ntBASIC12.59□□□□□ -0.39
CDX1P47902 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
CDX1P47902 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.59□□□□□ -0.39
CDX1P47902 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.59□□□□□ -0.39
CDX1P47902 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC12.59□□□□□ -0.39
CDX1P47902 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.59□□□□□ -0.39
CDX1P47902 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.59□□□□□ -0.39
CDX1P47902 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.59□□□□□ -0.39
CDX1P47902 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 LINC01230-201ENST00000625222 3017 ntBASIC12.59□□□□□ -0.39
CDX1P47902 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 AC073869.1-201ENST00000415574 2762 ntBASIC12.59□□□□□ -0.39
CDX1P47902 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CDX1P47902 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CDX1P47902 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.59□□□□□ -0.39
CDX1P47902 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC12.58□□□□□ -0.39
CDX1P47902 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.39
CDX1P47902 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
CDX1P47902 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
CDX1P47902 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.58□□□□□ -0.4
CDX1P47902 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 MIR4321-201ENST00000592276 80 ntBASIC12.58□□□□□ -0.4
CDX1P47902 AL589739.1-201ENST00000607720 493 ntBASIC12.58□□□□□ -0.4
CDX1P47902 AL138828.2-201ENST00000615812 383 ntBASIC12.58□□□□□ -0.4
CDX1P47902 AL590560.3-201ENST00000623350 461 ntBASIC12.58□□□□□ -0.4
CDX1P47902 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.58□□□□□ -0.4
CDX1P47902 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC12.58□□□□□ -0.4
CDX1P47902 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CDX1P47902 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CDX1P47902 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
CDX1P47902 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.57□□□□□ -0.4
CDX1P47902 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms