Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
CXCL1P09341 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 RAB17-203ENST00000409576 466 ntTSL 3 BASIC11.9□□□□□ -0.5
CXCL1P09341 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC11.9□□□□□ -0.5
CXCL1P09341 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 AC136632.2-201ENST00000512891 861 ntBASIC11.9□□□□□ -0.5
CXCL1P09341 IGHV3-65-201ENST00000523210 341 ntBASIC11.9□□□□□ -0.5
CXCL1P09341 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC11.9□□□□□ -0.5
CXCL1P09341 AP002469.2-201ENST00000531724 424 ntBASIC11.9□□□□□ -0.5
CXCL1P09341 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 AC023794.5-201ENST00000564380 2157 ntBASIC11.9□□□□□ -0.5
CXCL1P09341 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 AC025062.2-201ENST00000605477 670 ntBASIC11.9□□□□□ -0.5
CXCL1P09341 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC11.9□□□□□ -0.5
CXCL1P09341 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC11.9□□□□□ -0.5
CXCL1P09341 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC11.9□□□□□ -0.5
CXCL1P09341 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC11.9□□□□□ -0.5
CXCL1P09341 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
CXCL1P09341 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
CXCL1P09341 MIR497HG-202ENST00000572453 3838 ntBASIC11.9□□□□□ -0.5
CXCL1P09341 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.51
CXCL1P09341 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC11.9□□□□□ -0.51
CXCL1P09341 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.9□□□□□ -0.51
CXCL1P09341 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
CXCL1P09341 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
CXCL1P09341 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
CXCL1P09341 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 VENTXP1-201ENST00000569334 2716 ntBASIC11.89□□□□□ -0.51
CXCL1P09341 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC11.89□□□□□ -0.51
CXCL1P09341 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC11.89□□□□□ -0.51
CXCL1P09341 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC11.89□□□□□ -0.51
CXCL1P09341 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC11.89□□□□□ -0.51
CXCL1P09341 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC11.89□□□□□ -0.51
CXCL1P09341 ATP6V0CP3-201ENST00000417255 467 ntBASIC11.89□□□□□ -0.51
CXCL1P09341 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC11.89□□□□□ -0.51
CXCL1P09341 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC11.89□□□□□ -0.51
CXCL1P09341 IRF8-202ENST00000562492 946 ntTSL 3 BASIC11.89□□□□□ -0.51
CXCL1P09341 AL049597.2-201ENST00000565575 961 ntBASIC11.89□□□□□ -0.51
CXCL1P09341 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
CXCL1P09341 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC11.89□□□□□ -0.51
CXCL1P09341 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC11.89□□□□□ -0.51
CXCL1P09341 AL645728.2-201ENST00000641974 660 ntBASIC11.89□□□□□ -0.51
CXCL1P09341 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC11.89□□□□□ -0.51
CXCL1P09341 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC11.89□□□□□ -0.51
CXCL1P09341 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CXCL1P09341 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
CXCL1P09341 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC11.89□□□□□ -0.51
CXCL1P09341 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
CXCL1P09341 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CXCL1P09341 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
CXCL1P09341 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC11.88□□□□□ -0.51
CXCL1P09341 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CXCL1P09341 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
CXCL1P09341 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms