Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.22■□□□□ 0.51
COL4A1P02462 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.22■□□□□ 0.51
COL4A1P02462 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A1P02462 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
COL4A1P02462 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.22■□□□□ 0.51
COL4A1P02462 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A1P02462 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A1P02462 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL4A1P02462 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A1P02462 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A1P02462 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.22■□□□□ 0.51
COL4A1P02462 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A1P02462 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A1P02462 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A1P02462 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.22■□□□□ 0.51
COL4A1P02462 AC253536.4-201ENST00000440539 267 ntBASIC18.22■□□□□ 0.51
COL4A1P02462 AC012441.2-201ENST00000444843 739 ntBASIC18.22■□□□□ 0.51
COL4A1P02462 AC008267.1-201ENST00000474858 1069 ntBASIC18.22■□□□□ 0.51
COL4A1P02462 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.22■□□□□ 0.51
COL4A1P02462 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
COL4A1P02462 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.22■□□□□ 0.51
COL4A1P02462 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL4A1P02462 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL4A1P02462 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A1P02462 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A1P02462 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A1P02462 AL162727.3-201ENST00000635661 2787 ntBASIC18.21■□□□□ 0.51
COL4A1P02462 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.21■□□□□ 0.51
COL4A1P02462 RNA5SP359-201ENST00000364838 113 ntBASIC18.21■□□□□ 0.51
COL4A1P02462 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A1P02462 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A1P02462 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.21■□□□□ 0.51
COL4A1P02462 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A1P02462 AC026803.1-201ENST00000569130 274 ntBASIC18.21■□□□□ 0.51
COL4A1P02462 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A1P02462 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A1P02462 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.21■□□□□ 0.51
COL4A1P02462 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A1P02462 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A1P02462 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A1P02462 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL4A1P02462 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL4A1P02462 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A1P02462 AC008825.2-201ENST00000603374 718 ntBASIC18.2■□□□□ 0.5
COL4A1P02462 AC007881.3-201ENST00000608897 607 ntBASIC18.2■□□□□ 0.5
COL4A1P02462 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A1P02462 NAP1L6-202ENST00000641404 1222 ntBASIC18.2■□□□□ 0.5
COL4A1P02462 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A1P02462 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A1P02462 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A1P02462 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A1P02462 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
COL4A1P02462 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A1P02462 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A1P02462 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
COL4A1P02462 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL4A1P02462 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 FAM58BP-201ENST00000439056 645 ntBASIC18.19■□□□□ 0.5
COL4A1P02462 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC18.19■□□□□ 0.5
COL4A1P02462 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
COL4A1P02462 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms