Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CDKL5O76039 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 KRT8P22-201ENST00000562317 1415 ntBASIC17.76■□□□□ 0.43
CDKL5O76039 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
CDKL5O76039 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 AC002472.2-201ENST00000442739 958 ntBASIC17.76■□□□□ 0.43
CDKL5O76039 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.76■□□□□ 0.43
CDKL5O76039 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.76■□□□□ 0.43
CDKL5O76039 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.76■□□□□ 0.43
CDKL5O76039 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.76■□□□□ 0.43
CDKL5O76039 AL355385.1-201ENST00000606123 409 ntBASIC17.76■□□□□ 0.43
CDKL5O76039 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDKL5O76039 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.76■□□□□ 0.43
CDKL5O76039 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 LINC02228-204ENST00000642115 2962 ntBASIC17.75■□□□□ 0.43
CDKL5O76039 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 MIR661-201ENST00000384842 89 ntBASIC17.75■□□□□ 0.43
CDKL5O76039 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CDKL5O76039 AC236430.1-201ENST00000402231 743 ntBASIC17.75■□□□□ 0.43
CDKL5O76039 PIN1P1-201ENST00000412108 996 ntBASIC17.75■□□□□ 0.43
CDKL5O76039 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.75■□□□□ 0.43
CDKL5O76039 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.75■□□□□ 0.43
CDKL5O76039 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.75■□□□□ 0.43
CDKL5O76039 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.75■□□□□ 0.43
CDKL5O76039 AC133539.2-201ENST00000604757 467 ntBASIC17.75■□□□□ 0.43
CDKL5O76039 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CDKL5O76039 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.75■□□□□ 0.43
CDKL5O76039 PRSS30P-206ENST00000641773 873 ntBASIC17.75■□□□□ 0.43
CDKL5O76039 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.75■□□□□ 0.43
CDKL5O76039 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CDKL5O76039 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.75■□□□□ 0.43
CDKL5O76039 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 AL157414.3-201ENST00000624276 1954 ntBASIC17.75■□□□□ 0.43
CDKL5O76039 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.75■□□□□ 0.43
CDKL5O76039 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.75■□□□□ 0.43
CDKL5O76039 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDKL5O76039 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
CDKL5O76039 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.74■□□□□ 0.43
CDKL5O76039 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.74■□□□□ 0.43
CDKL5O76039 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 HLA-K-203ENST00000430151 1046 ntBASIC17.74■□□□□ 0.43
CDKL5O76039 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.74■□□□□ 0.43
CDKL5O76039 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.74■□□□□ 0.43
CDKL5O76039 API5-211ENST00000534695 560 ntTSL 5 BASIC17.74■□□□□ 0.43
CDKL5O76039 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.74■□□□□ 0.43
CDKL5O76039 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
CDKL5O76039 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.74■□□□□ 0.43
CDKL5O76039 AL359711.2-201ENST00000563105 872 ntBASIC17.74■□□□□ 0.43
CDKL5O76039 MIR4745-201ENST00000577608 62 ntBASIC17.74■□□□□ 0.43
CDKL5O76039 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.74■□□□□ 0.43
CDKL5O76039 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.74■□□□□ 0.43
CDKL5O76039 CHCHD2P3-201ENST00000603038 451 ntBASIC17.74■□□□□ 0.43
CDKL5O76039 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.74■□□□□ 0.43
CDKL5O76039 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CDKL5O76039 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDKL5O76039 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms