Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB2O43679 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB2O43679 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.25■□□□□ 0.03
LDB2O43679 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.25■□□□□ 0.03
LDB2O43679 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.25■□□□□ 0.03
LDB2O43679 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.25■□□□□ 0.03
LDB2O43679 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
LDB2O43679 ENPP7P5-201ENST00000541031 1031 ntBASIC15.25■□□□□ 0.03
LDB2O43679 CLUHP6-201ENST00000580789 941 ntBASIC15.25■□□□□ 0.03
LDB2O43679 AC027307.3-201ENST00000594262 1100 ntBASIC15.25■□□□□ 0.03
LDB2O43679 AL035252.4-201ENST00000624174 288 ntBASIC15.25■□□□□ 0.03
LDB2O43679 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.25■□□□□ 0.03
LDB2O43679 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LDB2O43679 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LDB2O43679 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB2O43679 KRT8P14-201ENST00000414254 1442 ntBASIC15.25■□□□□ 0.03
LDB2O43679 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LDB2O43679 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.25■□□□□ 0.03
LDB2O43679 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB2O43679 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.24■□□□□ 0.03
LDB2O43679 AL390755.1-201ENST00000623716 2027 ntBASIC15.24■□□□□ 0.03
LDB2O43679 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.24■□□□□ 0.03
LDB2O43679 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.24■□□□□ 0.03
LDB2O43679 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.24■□□□□ 0.03
LDB2O43679 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.24■□□□□ 0.03
LDB2O43679 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LDB2O43679 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.24■□□□□ 0.03
LDB2O43679 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LDB2O43679 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 AC099063.4-201ENST00000641099 1602 ntBASIC15.24■□□□□ 0.03
LDB2O43679 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.24■□□□□ 0.03
LDB2O43679 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB2O43679 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB2O43679 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB2O43679 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB2O43679 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB2O43679 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LDB2O43679 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms