Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SCN11AQ9UI33 IQSEC3P1-201ENST00000538799 536 ntBASIC19.14■□□□□ 0.65
SCN11AQ9UI33 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC19.14■□□□□ 0.65
SCN11AQ9UI33 RN7SL555P-201ENST00000584742 339 ntBASIC19.14■□□□□ 0.65
SCN11AQ9UI33 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SCN11AQ9UI33 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SCN11AQ9UI33 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.14■□□□□ 0.65
SCN11AQ9UI33 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 AC092978.1-202ENST00000637590 1327 ntBASIC19.13■□□□□ 0.65
SCN11AQ9UI33 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 NOC2LP1-201ENST00000450578 752 ntBASIC19.13■□□□□ 0.65
SCN11AQ9UI33 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN11AQ9UI33 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 RPL17P11-201ENST00000417593 544 ntBASIC19.12■□□□□ 0.65
SCN11AQ9UI33 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 AC253536.4-201ENST00000440539 267 ntBASIC19.12■□□□□ 0.65
SCN11AQ9UI33 IGHVIII-5-2-201ENST00000522505 261 ntBASIC19.12■□□□□ 0.65
SCN11AQ9UI33 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 AC007718.1-201ENST00000621078 280 ntBASIC19.12■□□□□ 0.65
SCN11AQ9UI33 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 AL109954.1-202ENST00000564051 2148 ntBASIC19.12■□□□□ 0.65
SCN11AQ9UI33 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN11AQ9UI33 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 LDHBP1-201ENST00000455730 1119 ntBASIC19.11■□□□□ 0.65
SCN11AQ9UI33 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AC008267.1-201ENST00000474858 1069 ntBASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.11■□□□□ 0.65
SCN11AQ9UI33 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC19.11■□□□□ 0.65
SCN11AQ9UI33 NPM1P43-201ENST00000558669 786 ntBASIC19.11■□□□□ 0.65
SCN11AQ9UI33 PHBP15-201ENST00000574228 665 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms