Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.48■□□□□ 0.39
USP28Q96RU2 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP28Q96RU2 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
USP28Q96RU2 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP28Q96RU2 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP28Q96RU2 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
USP28Q96RU2 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
USP28Q96RU2 AC093525.8-201ENST00000624099 1342 ntBASIC17.47■□□□□ 0.39
USP28Q96RU2 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.47■□□□□ 0.39
USP28Q96RU2 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.47■□□□□ 0.39
USP28Q96RU2 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 AC055876.3-201ENST00000431496 288 ntBASIC17.47■□□□□ 0.39
USP28Q96RU2 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.47■□□□□ 0.39
USP28Q96RU2 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 AC138649.4-201ENST00000612222 287 ntBASIC17.47■□□□□ 0.39
USP28Q96RU2 AC139530.3-201ENST00000620344 690 ntBASIC17.47■□□□□ 0.39
USP28Q96RU2 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP28Q96RU2 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
USP28Q96RU2 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.46■□□□□ 0.39
USP28Q96RU2 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.46■□□□□ 0.39
USP28Q96RU2 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 AC022144.1-201ENST00000602255 1580 ntBASIC17.46■□□□□ 0.39
USP28Q96RU2 AC063926.3-201ENST00000624734 5658 ntBASIC17.46■□□□□ 0.39
USP28Q96RU2 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
USP28Q96RU2 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
USP28Q96RU2 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.46■□□□□ 0.39
USP28Q96RU2 MRPS18AP1-201ENST00000414458 589 ntBASIC17.46■□□□□ 0.39
USP28Q96RU2 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.46■□□□□ 0.39
USP28Q96RU2 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.46■□□□□ 0.39
USP28Q96RU2 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.46■□□□□ 0.39
USP28Q96RU2 AC104794.3-201ENST00000566840 1248 ntBASIC17.46■□□□□ 0.39
USP28Q96RU2 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.46■□□□□ 0.39
USP28Q96RU2 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
USP28Q96RU2 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.46■□□□□ 0.39
USP28Q96RU2 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
USP28Q96RU2 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.46■□□□□ 0.39
USP28Q96RU2 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.46■□□□□ 0.39
USP28Q96RU2 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP28Q96RU2 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
USP28Q96RU2 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.45■□□□□ 0.38
USP28Q96RU2 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 LINC01230-201ENST00000625222 3017 ntBASIC17.45■□□□□ 0.38
USP28Q96RU2 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
USP28Q96RU2 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
USP28Q96RU2 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
USP28Q96RU2 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.45■□□□□ 0.38
USP28Q96RU2 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.45■□□□□ 0.38
USP28Q96RU2 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP28Q96RU2 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms