Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
LINC00477Q96M19 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
LINC00477Q96M19 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 CICP14-201ENST00000629111 2732 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 CNTNAP3P2-201ENST00000617175 3861 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AL080243.2-201ENST00000418783 582 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 UPF3AP3-201ENST00000420996 769 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 RPL13P2-201ENST00000440687 659 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AC069262.1-201ENST00000539058 672 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 METTL23-205ENST00000588302 925 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AC074044.1-201ENST00000609673 707 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AC087386.2-201ENST00000623212 4637 ntBASIC11.51□□□□□ -0.57
LINC00477Q96M19 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
LINC00477Q96M19 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.51□□□□□ -0.57
LINC00477Q96M19 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 203.2 ms