Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL109809.1-201ENST00000418979 1367 ntBASIC17.96■□□□□ 0.47
BRCA1P38398 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.96■□□□□ 0.47
BRCA1P38398 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 AC004554.1-201ENST00000422830 1468 ntBASIC17.96■□□□□ 0.47
BRCA1P38398 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BRCA1P38398 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.96■□□□□ 0.47
BRCA1P38398 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.95■□□□□ 0.46
BRCA1P38398 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.95■□□□□ 0.46
BRCA1P38398 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC17.95■□□□□ 0.46
BRCA1P38398 RN7SL23P-201ENST00000484055 275 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC17.95■□□□□ 0.46
BRCA1P38398 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC17.95■□□□□ 0.46
BRCA1P38398 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
BRCA1P38398 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC17.95■□□□□ 0.46
BRCA1P38398 AC013553.1-201ENST00000560906 267 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC17.95■□□□□ 0.46
BRCA1P38398 SIGLEC22P-201ENST00000599104 714 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 AC021016.3-201ENST00000608367 477 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 LILRP1-201ENST00000444199 1370 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 AL136172.1-201ENST00000598590 1394 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
BRCA1P38398 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
BRCA1P38398 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 AL603832.2-201ENST00000566195 2125 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.95■□□□□ 0.46
BRCA1P38398 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
BRCA1P38398 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.95■□□□□ 0.46
BRCA1P38398 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.95■□□□□ 0.46
BRCA1P38398 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BRCA1P38398 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC17.95■□□□□ 0.46
BRCA1P38398 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC17.95■□□□□ 0.46
BRCA1P38398 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.95■□□□□ 0.46
BRCA1P38398 AC092862.1-201ENST00000541534 533 ntBASIC17.95■□□□□ 0.46
BRCA1P38398 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC17.95■□□□□ 0.46
BRCA1P38398 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC17.95■□□□□ 0.46
BRCA1P38398 HELLS-212ENST00000630929 400 ntTSL 5 BASIC17.95■□□□□ 0.46
BRCA1P38398 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 AL513523.2-202ENST00000427283 2040 ntBASIC17.94■□□□□ 0.46
BRCA1P38398 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
BRCA1P38398 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC17.94■□□□□ 0.46
BRCA1P38398 NME6-208ENST00000435684 599 ntTSL 2 BASIC17.94■□□□□ 0.46
BRCA1P38398 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC17.94■□□□□ 0.46
BRCA1P38398 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.94■□□□□ 0.46
BRCA1P38398 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.94■□□□□ 0.46
BRCA1P38398 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.94■□□□□ 0.46
BRCA1P38398 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.94■□□□□ 0.46
BRCA1P38398 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.94■□□□□ 0.46
BRCA1P38398 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BRCA1P38398 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.94■□□□□ 0.46
BRCA1P38398 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
BRCA1P38398 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 GEMIN8P4-201ENST00000380526 729 ntBASIC17.93■□□□□ 0.46
BRCA1P38398 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC17.93■□□□□ 0.46
BRCA1P38398 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC17.93■□□□□ 0.46
BRCA1P38398 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms