Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 PKD1P5-201ENST00000532415 10291 ntBASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHMP4AQ9BY43 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 HLA-V-201ENST00000429037 534 ntBASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 MESTP3-201ENST00000503460 968 ntBASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 FTLP10-202ENST00000505798 471 ntBASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 AC078819.1-201ENST00000547454 765 ntBASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 AC012085.1-201ENST00000548270 765 ntBASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 REXO1L5P-201ENST00000622260 2098 ntBASIC19.44■□□□□ 0.7
CHMP4AQ9BY43 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 AC023024.2-201ENST00000623561 1993 ntBASIC19.43■□□□□ 0.7
CHMP4AQ9BY43 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 PES1-204ENST00000402284 2144 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 SERF2-209ENST00000409646 559 ntTSL 4 BASIC19.42■□□□□ 0.7
CHMP4AQ9BY43 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms