Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.95□□□□□ -0.02
CCDC28BQ9BUN5 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AL133267.1-201ENST00000398220 340 ntBASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AL353705.2-201ENST00000428243 662 ntBASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 FAM58CP-201ENST00000435741 640 ntBASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 RNA5SP416-201ENST00000516838 111 ntBASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 SLC25A39P2-201ENST00000537614 270 ntBASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AC105021.1-202ENST00000570572 669 ntBASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 COL6A4P2-202ENST00000504443 2753 ntBASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28BQ9BUN5 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 UXT-AS1-201ENST00000590504 1525 ntBASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 RPL13AP23-201ENST00000480739 586 ntBASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 BANF1P1-201ENST00000553684 263 ntBASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28BQ9BUN5 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms