Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.24
CCDC42Q96M95 AC018442.1-201ENST00000421439 2061 ntBASIC16.58■□□□□ 0.24
CCDC42Q96M95 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.58■□□□□ 0.24
CCDC42Q96M95 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC42Q96M95 LINC01230-201ENST00000625222 3017 ntBASIC16.58■□□□□ 0.24
CCDC42Q96M95 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AC097359.2-201ENST00000604992 2389 ntBASIC16.57■□□□□ 0.24
CCDC42Q96M95 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AL589739.1-201ENST00000607720 493 ntBASIC16.57■□□□□ 0.24
CCDC42Q96M95 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC42Q96M95 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC42Q96M95 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.56■□□□□ 0.24
CCDC42Q96M95 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 AC104457.1-201ENST00000401024 814 ntBASIC16.56■□□□□ 0.24
CCDC42Q96M95 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 SERBP1P3-201ENST00000459980 809 ntBASIC16.56■□□□□ 0.24
CCDC42Q96M95 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 MIR4469-201ENST00000583919 79 ntBASIC16.56■□□□□ 0.24
CCDC42Q96M95 LINC00628-201ENST00000628516 1289 ntBASIC16.56■□□□□ 0.24
CCDC42Q96M95 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC42Q96M95 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCDC42Q96M95 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
CCDC42Q96M95 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC42Q96M95 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms