Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC21.25■□□□□ 0.99
USP47Q96K76 RPL28-206ENST00000558752 671 ntTSL 3 BASIC21.25■□□□□ 0.99
USP47Q96K76 AC106820.3-201ENST00000561653 397 ntBASIC21.25■□□□□ 0.99
USP47Q96K76 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC21.25■□□□□ 0.99
USP47Q96K76 AC138466.3-201ENST00000619983 221 ntBASIC21.25■□□□□ 0.99
USP47Q96K76 AC132938.4-201ENST00000623835 848 ntBASIC21.25■□□□□ 0.99
USP47Q96K76 COX11-210ENST00000639671 696 ntBASIC21.25■□□□□ 0.99
USP47Q96K76 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
USP47Q96K76 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC21.25■□□□□ 0.99
USP47Q96K76 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP47Q96K76 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
USP47Q96K76 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 MARS-233ENST00000628866 2583 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 KRT223P-202ENST00000449164 1292 ntBASIC21.24■□□□□ 0.99
USP47Q96K76 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC21.24■□□□□ 0.99
USP47Q96K76 AC006453.4-201ENST00000636949 1252 ntBASIC21.24■□□□□ 0.99
USP47Q96K76 AL033527.4-201ENST00000641026 673 ntBASIC21.24■□□□□ 0.99
USP47Q96K76 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
USP47Q96K76 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
USP47Q96K76 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC21.24■□□□□ 0.99
USP47Q96K76 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 GPI-205ENST00000586425 1799 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 SF1-209ENST00000433274 2317 ntTSL 2 BASIC21.24■□□□□ 0.99
USP47Q96K76 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
USP47Q96K76 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC21.24■□□□□ 0.99
USP47Q96K76 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 CASK-202ENST00000378158 3848 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP47Q96K76 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC21.24■□□□□ 0.99
USP47Q96K76 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
USP47Q96K76 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC21.23■□□□□ 0.99
USP47Q96K76 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC21.23■□□□□ 0.99
USP47Q96K76 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC21.23■□□□□ 0.99
USP47Q96K76 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC21.23■□□□□ 0.99
USP47Q96K76 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 DBET-201ENST00000630918 3363 ntBASIC21.23■□□□□ 0.99
USP47Q96K76 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 AC006058.4-201ENST00000624016 1670 ntBASIC21.23■□□□□ 0.99
USP47Q96K76 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
USP47Q96K76 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP47Q96K76 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC21.23■□□□□ 0.99
USP47Q96K76 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
USP47Q96K76 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
USP47Q96K76 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 RN7SKP230-201ENST00000365642 335 ntBASIC21.23■□□□□ 0.99
USP47Q96K76 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP47Q96K76 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP47Q96K76 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC21.23■□□□□ 0.99
USP47Q96K76 MFF-223ENST00000524634 647 ntTSL 2 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms