Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
USP54Q70EL1 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.76■□□□□ 0.75
USP54Q70EL1 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC19.76■□□□□ 0.75
USP54Q70EL1 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USP54Q70EL1 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC19.75■□□□□ 0.75
USP54Q70EL1 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC19.75■□□□□ 0.75
USP54Q70EL1 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC19.75■□□□□ 0.75
USP54Q70EL1 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 DNM1P30-201ENST00000563586 452 ntBASIC19.75■□□□□ 0.75
USP54Q70EL1 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
USP54Q70EL1 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.75■□□□□ 0.75
USP54Q70EL1 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC19.75■□□□□ 0.75
USP54Q70EL1 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.75■□□□□ 0.75
USP54Q70EL1 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 API5-203ENST00000455725 2257 ntTSL 2 BASIC19.75■□□□□ 0.75
USP54Q70EL1 KRT18P9-201ENST00000604826 1300 ntBASIC19.75■□□□□ 0.75
USP54Q70EL1 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.75■□□□□ 0.75
USP54Q70EL1 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC19.75■□□□□ 0.75
USP54Q70EL1 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP54Q70EL1 RPS9P1-201ENST00000419943 583 ntBASIC19.75■□□□□ 0.75
USP54Q70EL1 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC19.75■□□□□ 0.75
USP54Q70EL1 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC19.75■□□□□ 0.75
USP54Q70EL1 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.75■□□□□ 0.75
USP54Q70EL1 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC19.75■□□□□ 0.75
USP54Q70EL1 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC19.75■□□□□ 0.75
USP54Q70EL1 AC087045.2-201ENST00000606279 1003 ntBASIC19.75■□□□□ 0.75
USP54Q70EL1 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC19.75■□□□□ 0.75
USP54Q70EL1 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
USP54Q70EL1 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USP54Q70EL1 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.74■□□□□ 0.75
USP54Q70EL1 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.74■□□□□ 0.75
USP54Q70EL1 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC19.74■□□□□ 0.75
USP54Q70EL1 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
USP54Q70EL1 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC19.74■□□□□ 0.75
USP54Q70EL1 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.74■□□□□ 0.75
USP54Q70EL1 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
USP54Q70EL1 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC19.74■□□□□ 0.75
USP54Q70EL1 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USP54Q70EL1 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 RPSAP15-201ENST00000448168 861 ntBASIC19.74■□□□□ 0.75
USP54Q70EL1 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.74■□□□□ 0.75
USP54Q70EL1 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC19.74■□□□□ 0.75
USP54Q70EL1 MIR7845-201ENST00000618396 99 ntBASIC19.74■□□□□ 0.75
USP54Q70EL1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP54Q70EL1 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
USP54Q70EL1 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.73■□□□□ 0.75
USP54Q70EL1 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.73■□□□□ 0.75
USP54Q70EL1 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
USP54Q70EL1 AL512430.1-201ENST00000392575 860 ntBASIC19.73■□□□□ 0.75
USP54Q70EL1 AL355334.1-201ENST00000417713 215 ntBASIC19.73■□□□□ 0.75
USP54Q70EL1 DNAJB1P1-201ENST00000429417 1024 ntBASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms