Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
NEK3P51956 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.84■□□□□ 0.13
NEK3P51956 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
NEK3P51956 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
NEK3P51956 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.84■□□□□ 0.13
NEK3P51956 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.84■□□□□ 0.13
NEK3P51956 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.84■□□□□ 0.13
NEK3P51956 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.84■□□□□ 0.13
NEK3P51956 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NEK3P51956 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
NEK3P51956 MROH4P-201ENST00000431302 1578 ntBASIC15.83■□□□□ 0.13
NEK3P51956 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.83■□□□□ 0.13
NEK3P51956 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.13
NEK3P51956 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 AC067930.6-201ENST00000623257 4947 ntBASIC15.83■□□□□ 0.13
NEK3P51956 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NEK3P51956 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.83■□□□□ 0.12
NEK3P51956 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.83■□□□□ 0.12
NEK3P51956 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 INE1-201ENST00000456273 945 ntBASIC15.83■□□□□ 0.12
NEK3P51956 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.83■□□□□ 0.12
NEK3P51956 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
NEK3P51956 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.83■□□□□ 0.12
NEK3P51956 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
NEK3P51956 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.83■□□□□ 0.12
NEK3P51956 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.83■□□□□ 0.12
NEK3P51956 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NEK3P51956 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
NEK3P51956 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.82■□□□□ 0.12
NEK3P51956 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.82■□□□□ 0.12
NEK3P51956 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
NEK3P51956 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.82■□□□□ 0.12
NEK3P51956 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 MIR8072-201ENST00000614241 80 ntBASIC15.82■□□□□ 0.12
NEK3P51956 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NEK3P51956 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
NEK3P51956 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms