Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 RHOQP3-201ENST00000437982 621 ntBASIC12.82□□□□□ -0.36
HOXA1P49639 RNA5SP415-201ENST00000517246 115 ntBASIC12.82□□□□□ -0.36
HOXA1P49639 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.82□□□□□ -0.36
HOXA1P49639 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.82□□□□□ -0.36
HOXA1P49639 CALM3-211ENST00000598871 561 ntTSL 4 BASIC12.82□□□□□ -0.36
HOXA1P49639 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.81□□□□□ -0.36
HOXA1P49639 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 AC106818.1-201ENST00000623223 3242 ntBASIC12.81□□□□□ -0.36
HOXA1P49639 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 AOC4P-203ENST00000566825 2289 ntBASIC12.81□□□□□ -0.36
HOXA1P49639 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.81□□□□□ -0.36
HOXA1P49639 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC12.81□□□□□ -0.36
HOXA1P49639 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.81□□□□□ -0.36
HOXA1P49639 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 AC116407.3-201ENST00000623905 1129 ntBASIC12.81□□□□□ -0.36
HOXA1P49639 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 TKT-201ENST00000296289 1931 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
HOXA1P49639 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.81□□□□□ -0.36
HOXA1P49639 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.81□□□□□ -0.36
HOXA1P49639 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 NIN-202ENST00000324330 4364 ntTSL 5 BASIC12.81□□□□□ -0.36
HOXA1P49639 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HOXA1P49639 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 AC025580.3-201ENST00000617932 1424 ntBASIC12.8□□□□□ -0.36
HOXA1P49639 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.8□□□□□ -0.36
HOXA1P49639 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms