Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AL592076.1-201ENST00000424448 303 ntBASIC16.67■□□□□ 0.26
HTTP42858 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 SNX15-201ENST00000352068 771 ntTSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC16.67■□□□□ 0.26
HTTP42858 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC16.67■□□□□ 0.26
HTTP42858 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 AL022334.2-201ENST00000610000 484 ntBASIC16.67■□□□□ 0.26
HTTP42858 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HTTP42858 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HTTP42858 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HTTP42858 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HTTP42858 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HTTP42858 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HTTP42858 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HTTP42858 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HTTP42858 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC16.66■□□□□ 0.26
HTTP42858 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 PMEL-214ENST00000550447 901 ntTSL 3 BASIC16.66■□□□□ 0.26
HTTP42858 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC16.66■□□□□ 0.26
HTTP42858 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HTTP42858 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HTTP42858 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC16.66■□□□□ 0.26
HTTP42858 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC16.66■□□□□ 0.26
HTTP42858 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 CR392039.1-201ENST00000623217 204 ntBASIC16.66■□□□□ 0.26
HTTP42858 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.66■□□□□ 0.26
HTTP42858 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HTTP42858 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.66■□□□□ 0.26
HTTP42858 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 XBP1P1-201ENST00000436573 652 ntBASIC16.65■□□□□ 0.26
HTTP42858 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 DPY19L2P5-201ENST00000456300 331 ntBASIC16.65■□□□□ 0.26
HTTP42858 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
HTTP42858 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC16.65■□□□□ 0.26
HTTP42858 AL596087.1-201ENST00000400979 1969 ntBASIC16.65■□□□□ 0.26
HTTP42858 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC16.65■□□□□ 0.26
HTTP42858 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.65■□□□□ 0.26
HTTP42858 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
HTTP42858 MARK2P16-201ENST00000605714 1723 ntBASIC16.65■□□□□ 0.26
HTTP42858 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HTTP42858 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HTTP42858 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HTTP42858 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.65■□□□□ 0.26
HTTP42858 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms