Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
COL6A2P12110 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL6A2P12110 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.16■□□□□ 0.02
COL6A2P12110 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.16■□□□□ 0.02
COL6A2P12110 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL6A2P12110 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL6A2P12110 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.16■□□□□ 0.02
COL6A2P12110 BX842568.4-201ENST00000421222 227 ntBASIC15.16■□□□□ 0.02
COL6A2P12110 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.16■□□□□ 0.02
COL6A2P12110 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.16■□□□□ 0.02
COL6A2P12110 HLA-J-203ENST00000494367 1087 ntBASIC15.16■□□□□ 0.02
COL6A2P12110 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.16■□□□□ 0.02
COL6A2P12110 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.16■□□□□ 0.02
COL6A2P12110 ZNF890P-202ENST00000530367 1156 ntBASIC15.16■□□□□ 0.02
COL6A2P12110 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
COL6A2P12110 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.16■□□□□ 0.02
COL6A2P12110 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
COL6A2P12110 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
COL6A2P12110 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.16■□□□□ 0.02
COL6A2P12110 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A2P12110 MIR600HG-201ENST00000449175 5984 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.15■□□□□ 0.02
COL6A2P12110 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 CNN2P11-201ENST00000429351 262 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 AP006288.1-201ENST00000446065 395 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
COL6A2P12110 AC004066.1-201ENST00000502488 802 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.15■□□□□ 0.02
COL6A2P12110 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 AL138828.2-201ENST00000615812 383 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 SPDYE12P-201ENST00000618416 771 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.15■□□□□ 0.02
COL6A2P12110 AL109936.8-201ENST00000641772 604 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
COL6A2P12110 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
COL6A2P12110 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A2P12110 AL360270.3-201ENST00000609118 1348 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A2P12110 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.15■□□□□ 0.02
COL6A2P12110 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL6A2P12110 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A2P12110 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A2P12110 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
COL6A2P12110 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A2P12110 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A2P12110 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A2P12110 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
COL6A2P12110 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms