Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.79□□□□□ -0.04
SLC28A1O00337 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.79□□□□□ -0.04
SLC28A1O00337 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.79□□□□□ -0.04
SLC28A1O00337 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 KLF2P3-201ENST00000451977 1087 ntBASIC14.79□□□□□ -0.04
SLC28A1O00337 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SLC28A1O00337 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.79□□□□□ -0.04
SLC28A1O00337 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.79□□□□□ -0.04
SLC28A1O00337 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.79□□□□□ -0.04
SLC28A1O00337 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 AC004449.1-201ENST00000564240 433 ntBASIC14.79□□□□□ -0.04
SLC28A1O00337 AC140878.1-201ENST00000565277 250 ntBASIC14.79□□□□□ -0.04
SLC28A1O00337 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
SLC28A1O00337 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.79□□□□□ -0.04
SLC28A1O00337 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.79□□□□□ -0.04
SLC28A1O00337 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.79□□□□□ -0.04
SLC28A1O00337 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 AC005912.2-201ENST00000619492 2400 ntBASIC14.79□□□□□ -0.04
SLC28A1O00337 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.79□□□□□ -0.04
SLC28A1O00337 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.79□□□□□ -0.04
SLC28A1O00337 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SLC28A1O00337 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.79□□□□□ -0.04
SLC28A1O00337 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.78□□□□□ -0.04
SLC28A1O00337 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 AL139400.1-201ENST00000366220 510 ntBASIC14.78□□□□□ -0.04
SLC28A1O00337 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.78□□□□□ -0.04
SLC28A1O00337 DNAJB3-202ENST00000449667 1266 ntBASIC14.78□□□□□ -0.04
SLC28A1O00337 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.78□□□□□ -0.04
SLC28A1O00337 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.78□□□□□ -0.04
SLC28A1O00337 AC004066.1-201ENST00000502488 802 ntBASIC14.78□□□□□ -0.04
SLC28A1O00337 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.78□□□□□ -0.04
SLC28A1O00337 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.78□□□□□ -0.04
SLC28A1O00337 ZNF890P-202ENST00000530367 1156 ntBASIC14.78□□□□□ -0.04
SLC28A1O00337 AC004461.2-201ENST00000629517 803 ntBASIC14.78□□□□□ -0.04
SLC28A1O00337 AC079781.4-201ENST00000641908 219 ntBASIC14.78□□□□□ -0.04
SLC28A1O00337 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.78□□□□□ -0.04
SLC28A1O00337 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SLC28A1O00337 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SLC28A1O00337 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.78□□□□□ -0.04
SLC28A1O00337 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.77□□□□□ -0.04
SLC28A1O00337 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
SLC28A1O00337 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.77□□□□□ -0.04
SLC28A1O00337 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SLC28A1O00337 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SLC28A1O00337 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
SLC28A1O00337 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SLC28A1O00337 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SLC28A1O00337 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SLC28A1O00337 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SLC28A1O00337 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SLC28A1O00337 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SLC28A1O00337 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SLC28A1O00337 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.77□□□□□ -0.05
SLC28A1O00337 AC107890.1-201ENST00000422478 521 ntBASIC14.77□□□□□ -0.05
SLC28A1O00337 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.77□□□□□ -0.05
SLC28A1O00337 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms