Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA3Q9Y5H0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.34■■□□□ 1.17
PCDHGA3Q9Y5H0 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHGA3Q9Y5H0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHGA3Q9Y5H0 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC22.33■■□□□ 1.17
PCDHGA3Q9Y5H0 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA3Q9Y5H0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA3Q9Y5H0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA3Q9Y5H0 AC092803.2-201ENST00000564287 1899 ntBASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 MIR4466-201ENST00000606121 54 ntBASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
PCDHGA3Q9Y5H0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 AC110285.6-201ENST00000617652 491 ntBASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.31■■□□□ 1.16
PCDHGA3Q9Y5H0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA3Q9Y5H0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA3Q9Y5H0 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA3Q9Y5H0 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.3■■□□□ 1.16
PCDHGA3Q9Y5H0 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.3■■□□□ 1.16
PCDHGA3Q9Y5H0 AL512631.2-201ENST00000604634 923 ntBASIC22.3■■□□□ 1.16
PCDHGA3Q9Y5H0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
PCDHGA3Q9Y5H0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA3Q9Y5H0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA3Q9Y5H0 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PCDHGA3Q9Y5H0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA3Q9Y5H0 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.29■■□□□ 1.16
PCDHGA3Q9Y5H0 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA3Q9Y5H0 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA3Q9Y5H0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA3Q9Y5H0 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 TFPT-201ENST00000391757 774 ntTSL 5 BASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 AC133561.4-201ENST00000566112 224 ntBASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 MIR6722-201ENST00000617286 78 ntBASIC22.27■■□□□ 1.16
PCDHGA3Q9Y5H0 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 AC090877.2-201ENST00000558441 1738 ntBASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 AC096631.2-201ENST00000436136 790 ntBASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.26■■□□□ 1.15
PCDHGA3Q9Y5H0 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PCDHGA3Q9Y5H0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
PCDHGA3Q9Y5H0 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA3Q9Y5H0 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.25■■□□□ 1.15
PCDHGA3Q9Y5H0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.25■■□□□ 1.15
PCDHGA3Q9Y5H0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA3Q9Y5H0 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
PCDHGA3Q9Y5H0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms