Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
BRF2Q9HAW0 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.12■■□□□ 1.13
BRF2Q9HAW0 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
BRF2Q9HAW0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
BRF2Q9HAW0 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
BRF2Q9HAW0 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
BRF2Q9HAW0 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BRF2Q9HAW0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
BRF2Q9HAW0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.1■■□□□ 1.13
BRF2Q9HAW0 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.1■■□□□ 1.13
BRF2Q9HAW0 AC012354.3-201ENST00000623734 483 ntBASIC22.1■■□□□ 1.13
BRF2Q9HAW0 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
BRF2Q9HAW0 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.09■■□□□ 1.13
BRF2Q9HAW0 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.09■■□□□ 1.13
BRF2Q9HAW0 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.09■■□□□ 1.13
BRF2Q9HAW0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.09■■□□□ 1.13
BRF2Q9HAW0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
BRF2Q9HAW0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.08■■□□□ 1.13
BRF2Q9HAW0 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
BRF2Q9HAW0 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
BRF2Q9HAW0 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.08■■□□□ 1.13
BRF2Q9HAW0 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.08■■□□□ 1.13
BRF2Q9HAW0 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
BRF2Q9HAW0 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
BRF2Q9HAW0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
BRF2Q9HAW0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
BRF2Q9HAW0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 AL022069.1-201ENST00000568025 1636 ntBASIC22.07■■□□□ 1.12
BRF2Q9HAW0 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 PVT1_1.1-201ENST00000615125 194 ntBASIC22.07■■□□□ 1.12
BRF2Q9HAW0 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.07■■□□□ 1.12
BRF2Q9HAW0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 KRT18P24-201ENST00000344739 1156 ntBASIC22.06■■□□□ 1.12
BRF2Q9HAW0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
BRF2Q9HAW0 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.05■■□□□ 1.12
BRF2Q9HAW0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.05■■□□□ 1.12
BRF2Q9HAW0 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.05■■□□□ 1.12
BRF2Q9HAW0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.05■■□□□ 1.12
BRF2Q9HAW0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
BRF2Q9HAW0 AC120024.1-201ENST00000562672 995 ntBASIC22.05■■□□□ 1.12
BRF2Q9HAW0 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 AC010980.1-201ENST00000587192 1142 ntBASIC22.04■■□□□ 1.12
BRF2Q9HAW0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BRF2Q9HAW0 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRF2Q9HAW0 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
BRF2Q9HAW0 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms