Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHROOM3Q8TF72 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHROOM3Q8TF72 AC131274.2-201ENST00000580697 1507 ntBASIC23.68■■□□□ 1.38
SHROOM3Q8TF72 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHROOM3Q8TF72 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SHROOM3Q8TF72 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SHROOM3Q8TF72 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHROOM3Q8TF72 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.66■■□□□ 1.38
SHROOM3Q8TF72 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.66■■□□□ 1.38
SHROOM3Q8TF72 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 YBX1P4-201ENST00000392794 808 ntBASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.65■■□□□ 1.38
SHROOM3Q8TF72 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.64■■□□□ 1.38
SHROOM3Q8TF72 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHROOM3Q8TF72 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHROOM3Q8TF72 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
SHROOM3Q8TF72 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.64■■□□□ 1.38
SHROOM3Q8TF72 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
SHROOM3Q8TF72 AC004812.2-201ENST00000611079 2094 ntBASIC23.64■■□□□ 1.37
SHROOM3Q8TF72 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.64■■□□□ 1.37
SHROOM3Q8TF72 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
SHROOM3Q8TF72 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
SHROOM3Q8TF72 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHROOM3Q8TF72 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SHROOM3Q8TF72 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.62■■□□□ 1.37
SHROOM3Q8TF72 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SHROOM3Q8TF72 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.62■■□□□ 1.37
SHROOM3Q8TF72 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SHROOM3Q8TF72 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.62■■□□□ 1.37
SHROOM3Q8TF72 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SHROOM3Q8TF72 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SHROOM3Q8TF72 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SHROOM3Q8TF72 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.61■■□□□ 1.37
SHROOM3Q8TF72 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SHROOM3Q8TF72 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM3Q8TF72 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM3Q8TF72 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM3Q8TF72 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM3Q8TF72 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM3Q8TF72 BX664725.1-201ENST00000438252 379 ntBASIC23.59■■□□□ 1.37
SHROOM3Q8TF72 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
SHROOM3Q8TF72 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM3Q8TF72 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
SHROOM3Q8TF72 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC23.58■■□□□ 1.36
SHROOM3Q8TF72 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.58■■□□□ 1.36
SHROOM3Q8TF72 SNX5-217ENST00000606557 1087 ntBASIC23.58■■□□□ 1.36
SHROOM3Q8TF72 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM3Q8TF72 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM3Q8TF72 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM3Q8TF72 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.57■■□□□ 1.36
SHROOM3Q8TF72 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.57■■□□□ 1.36
SHROOM3Q8TF72 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.57■■□□□ 1.36
SHROOM3Q8TF72 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms