Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 KRT18P10-201ENST00000388836 1287 ntBASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 MIR4466-201ENST00000606121 54 ntBASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 AP003733.4-201ENST00000623785 1697 ntBASIC26.6■■□□□ 1.85
SH3RF1Q7Z6J0 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.59■■□□□ 1.85
SH3RF1Q7Z6J0 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 AC010997.5-201ENST00000609182 354 ntBASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
SH3RF1Q7Z6J0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.84
SH3RF1Q7Z6J0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
SH3RF1Q7Z6J0 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC26.57■■□□□ 1.84
SH3RF1Q7Z6J0 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SH3RF1Q7Z6J0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
SH3RF1Q7Z6J0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SH3RF1Q7Z6J0 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC26.57■■□□□ 1.84
SH3RF1Q7Z6J0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SH3RF1Q7Z6J0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SH3RF1Q7Z6J0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
SH3RF1Q7Z6J0 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.56■■□□□ 1.84
SH3RF1Q7Z6J0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.56■■□□□ 1.84
SH3RF1Q7Z6J0 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 MIR4281-201ENST00000580852 62 ntBASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 AC092666.2-201ENST00000613287 246 ntBASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SH3RF1Q7Z6J0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 MIR6724-1-201ENST00000616420 92 ntBASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 MIR6724-2-201ENST00000616483 92 ntBASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 MIR6724-4-201ENST00000617390 92 ntBASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 MIR6724-3-201ENST00000622482 92 ntBASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SH3RF1Q7Z6J0 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
SH3RF1Q7Z6J0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
SH3RF1Q7Z6J0 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.53■■□□□ 1.84
SH3RF1Q7Z6J0 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SH3RF1Q7Z6J0 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SH3RF1Q7Z6J0 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.52■■□□□ 1.84
SH3RF1Q7Z6J0 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.52■■□□□ 1.84
SH3RF1Q7Z6J0 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 ZNRF2P3-201ENST00000424200 374 ntBASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SH3RF1Q7Z6J0 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SH3RF1Q7Z6J0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.5■■□□□ 1.83
SH3RF1Q7Z6J0 AL356740.2-201ENST00000601559 647 ntBASIC26.5■■□□□ 1.83
SH3RF1Q7Z6J0 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.5■■□□□ 1.83
SH3RF1Q7Z6J0 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SH3RF1Q7Z6J0 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SH3RF1Q7Z6J0 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SH3RF1Q7Z6J0 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC26.49■■□□□ 1.83
SH3RF1Q7Z6J0 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC26.49■■□□□ 1.83
SH3RF1Q7Z6J0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SH3RF1Q7Z6J0 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.49■■□□□ 1.83
SH3RF1Q7Z6J0 AC133561.4-201ENST00000566112 224 ntBASIC26.49■■□□□ 1.83
SH3RF1Q7Z6J0 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 MTDHP2-201ENST00000601468 714 ntBASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SH3RF1Q7Z6J0 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SH3RF1Q7Z6J0 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC26.47■■□□□ 1.83
SH3RF1Q7Z6J0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
SH3RF1Q7Z6J0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.47■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms