Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SCN1AP35498 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.84■■□□□ 1.57
SCN1AP35498 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.84■■□□□ 1.57
SCN1AP35498 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
SCN1AP35498 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC24.84■■□□□ 1.57
SCN1AP35498 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.83■■□□□ 1.57
SCN1AP35498 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.83■■□□□ 1.57
SCN1AP35498 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SCN1AP35498 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SCN1AP35498 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.83■■□□□ 1.57
SCN1AP35498 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.83■■□□□ 1.57
SCN1AP35498 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.83■■□□□ 1.57
SCN1AP35498 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.83■■□□□ 1.57
SCN1AP35498 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC24.83■■□□□ 1.57
SCN1AP35498 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.83■■□□□ 1.56
SCN1AP35498 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.83■■□□□ 1.56
SCN1AP35498 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC24.83■■□□□ 1.56
SCN1AP35498 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.56
SCN1AP35498 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.82■■□□□ 1.56
SCN1AP35498 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SCN1AP35498 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.82■■□□□ 1.56
SCN1AP35498 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SCN1AP35498 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
SCN1AP35498 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
SCN1AP35498 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.82■■□□□ 1.56
SCN1AP35498 AC010997.5-201ENST00000609182 354 ntBASIC24.81■■□□□ 1.56
SCN1AP35498 MIR6724-1-201ENST00000616420 92 ntBASIC24.81■■□□□ 1.56
SCN1AP35498 MIR6724-2-201ENST00000616483 92 ntBASIC24.81■■□□□ 1.56
SCN1AP35498 MIR6724-4-201ENST00000617390 92 ntBASIC24.81■■□□□ 1.56
SCN1AP35498 MIR6724-3-201ENST00000622482 92 ntBASIC24.81■■□□□ 1.56
SCN1AP35498 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
SCN1AP35498 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SCN1AP35498 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
SCN1AP35498 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SCN1AP35498 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SCN1AP35498 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
SCN1AP35498 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SCN1AP35498 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
SCN1AP35498 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SCN1AP35498 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC24.8■■□□□ 1.56
SCN1AP35498 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SCN1AP35498 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.79■■□□□ 1.56
SCN1AP35498 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
SCN1AP35498 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SCN1AP35498 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.79■■□□□ 1.56
SCN1AP35498 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
SCN1AP35498 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SCN1AP35498 AP003733.4-201ENST00000623785 1697 ntBASIC24.79■■□□□ 1.56
SCN1AP35498 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.79■■□□□ 1.56
SCN1AP35498 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC24.78■■□□□ 1.56
SCN1AP35498 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.78■■□□□ 1.56
SCN1AP35498 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SCN1AP35498 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
SCN1AP35498 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.78■■□□□ 1.56
SCN1AP35498 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SCN1AP35498 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
SCN1AP35498 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.78■■□□□ 1.56
SCN1AP35498 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SCN1AP35498 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SCN1AP35498 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
SCN1AP35498 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC24.78■■□□□ 1.56
SCN1AP35498 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC24.78■■□□□ 1.56
SCN1AP35498 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
SCN1AP35498 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
SCN1AP35498 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.77■■□□□ 1.56
SCN1AP35498 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC24.77■■□□□ 1.56
SCN1AP35498 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.77■■□□□ 1.56
SCN1AP35498 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.77■■□□□ 1.56
SCN1AP35498 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC24.76■■□□□ 1.55
SCN1AP35498 AL117332.1-201ENST00000622628 974 ntBASIC24.76■■□□□ 1.55
SCN1AP35498 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SCN1AP35498 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.76■■□□□ 1.55
SCN1AP35498 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SCN1AP35498 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
SCN1AP35498 HLA-L-211ENST00000482052 1765 ntBASIC24.76■■□□□ 1.55
SCN1AP35498 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.76■■□□□ 1.55
SCN1AP35498 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.75■■□□□ 1.55
SCN1AP35498 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SCN1AP35498 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SCN1AP35498 TFPT-201ENST00000391757 774 ntTSL 5 BASIC24.75■■□□□ 1.55
SCN1AP35498 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
SCN1AP35498 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
SCN1AP35498 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SCN1AP35498 AC142381.3-201ENST00000568208 1670 ntBASIC24.74■■□□□ 1.55
SCN1AP35498 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.74■■□□□ 1.55
SCN1AP35498 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
SCN1AP35498 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
SCN1AP35498 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
SCN1AP35498 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
SCN1AP35498 CD72-202ENST00000378430 585 ntTSL 3 BASIC24.74■■□□□ 1.55
SCN1AP35498 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC24.74■■□□□ 1.55
SCN1AP35498 AC004448.1-201ENST00000458332 883 ntBASIC24.74■■□□□ 1.55
SCN1AP35498 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
SCN1AP35498 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
SCN1AP35498 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC24.73■■□□□ 1.55
SCN1AP35498 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.73■■□□□ 1.55
SCN1AP35498 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.73■■□□□ 1.55
SCN1AP35498 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SCN1AP35498 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
SCN1AP35498 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms