Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
MSX1P28360 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSX1P28360 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.16■□□□□ 0.98
MSX1P28360 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSX1P28360 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.15■□□□□ 0.98
MSX1P28360 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSX1P28360 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.15■□□□□ 0.98
MSX1P28360 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
MSX1P28360 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.15■□□□□ 0.98
MSX1P28360 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSX1P28360 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSX1P28360 AC137630.3-201ENST00000607245 391 ntBASIC21.15■□□□□ 0.98
MSX1P28360 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
MSX1P28360 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
MSX1P28360 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSX1P28360 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSX1P28360 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.14■□□□□ 0.97
MSX1P28360 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSX1P28360 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.14■□□□□ 0.97
MSX1P28360 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
MSX1P28360 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSX1P28360 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.14■□□□□ 0.97
MSX1P28360 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSX1P28360 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.13■□□□□ 0.97
MSX1P28360 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSX1P28360 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSX1P28360 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSX1P28360 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.13■□□□□ 0.97
MSX1P28360 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSX1P28360 HLA-L-211ENST00000482052 1765 ntBASIC21.13■□□□□ 0.97
MSX1P28360 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
MSX1P28360 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSX1P28360 UNC93B8-201ENST00000511903 705 ntBASIC21.12■□□□□ 0.97
MSX1P28360 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX1P28360 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSX1P28360 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX1P28360 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX1P28360 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX1P28360 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSX1P28360 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX1P28360 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX1P28360 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.11■□□□□ 0.97
MSX1P28360 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.11■□□□□ 0.97
MSX1P28360 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.11■□□□□ 0.97
MSX1P28360 KRT16P3-201ENST00000439127 1283 ntBASIC21.11■□□□□ 0.97
MSX1P28360 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.11■□□□□ 0.97
MSX1P28360 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.11■□□□□ 0.97
MSX1P28360 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX1P28360 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSX1P28360 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSX1P28360 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
MSX1P28360 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSX1P28360 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSX1P28360 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MSX1P28360 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.1■□□□□ 0.97
MSX1P28360 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.1■□□□□ 0.97
MSX1P28360 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.1■□□□□ 0.97
MSX1P28360 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.1■□□□□ 0.97
MSX1P28360 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.1■□□□□ 0.97
MSX1P28360 AL161729.1-201ENST00000604104 1402 ntBASIC21.1■□□□□ 0.97
MSX1P28360 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSX1P28360 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSX1P28360 AF131216.4-201ENST00000638924 1588 ntBASIC21.1■□□□□ 0.97
MSX1P28360 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSX1P28360 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSX1P28360 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.09■□□□□ 0.97
MSX1P28360 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSX1P28360 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSX1P28360 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSX1P28360 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSX1P28360 AC141586.4-201ENST00000624558 1573 ntBASIC21.09■□□□□ 0.97
MSX1P28360 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MSX1P28360 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MSX1P28360 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MSX1P28360 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.08■□□□□ 0.97
MSX1P28360 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.08■□□□□ 0.97
MSX1P28360 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
MSX1P28360 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.08■□□□□ 0.96
MSX1P28360 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSX1P28360 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.07■□□□□ 0.96
MSX1P28360 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.07■□□□□ 0.96
MSX1P28360 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.07■□□□□ 0.96
MSX1P28360 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.07■□□□□ 0.96
MSX1P28360 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
MSX1P28360 AL139125.2-201ENST00000623134 1869 ntBASIC21.07■□□□□ 0.96
MSX1P28360 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSX1P28360 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.07■□□□□ 0.96
MSX1P28360 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX1P28360 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.06■□□□□ 0.96
MSX1P28360 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.06■□□□□ 0.96
MSX1P28360 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
MSX1P28360 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSX1P28360 AC135731.1-201ENST00000569415 2548 ntBASIC21.06■□□□□ 0.96
MSX1P28360 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
MSX1P28360 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 MIR935-201ENST00000401179 91 ntBASIC21.05■□□□□ 0.96
MSX1P28360 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms