Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AC093028.1-201ENST00000622998 982 ntBASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AL590560.3-201ENST00000623350 461 ntBASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 BTBD7P1-201ENST00000447253 1453 ntBASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 TREML5P-201ENST00000421694 576 ntBASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 TIMM17BP1-201ENST00000545713 516 ntBASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIF3AQ9Y2N7 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 TSSK5P-201ENST00000423978 907 ntBASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 AC241585.1-201ENST00000433527 519 ntBASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 AC009477.1-201ENST00000452936 217 ntBASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.87□□□□□ -0.19
HIF3AQ9Y2N7 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms