Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RSPO3Q9BXY4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RSPO3Q9BXY4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RSPO3Q9BXY4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RSPO3Q9BXY4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RSPO3Q9BXY4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RSPO3Q9BXY4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RSPO3Q9BXY4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 AC015802.1-201ENST00000588104 1449 ntBASIC14.02□□□□□ -0.16
RSPO3Q9BXY4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 UGT1A2P-201ENST00000454886 866 ntBASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 VDAC1P7-201ENST00000462417 847 ntBASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
RSPO3Q9BXY4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 AC006504.5-208ENST00000588784 2401 ntBASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 AC136759.1-202ENST00000530858 2194 ntBASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 PRSS30P-206ENST00000641773 873 ntBASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 AC015656.1-201ENST00000624209 3578 ntBASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RSPO3Q9BXY4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms