Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP88Q99567 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
NUP88Q99567 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.93■□□□□ 0.46
NUP88Q99567 AL138709.1-201ENST00000614840 1693 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
NUP88Q99567 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
NUP88Q99567 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 AC092850.2-201ENST00000623821 2697 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.93■□□□□ 0.46
NUP88Q99567 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
NUP88Q99567 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.93■□□□□ 0.46
NUP88Q99567 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP88Q99567 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 C2orf27AP3-201ENST00000434123 579 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.93■□□□□ 0.46
NUP88Q99567 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.93■□□□□ 0.46
NUP88Q99567 AL590640.2-201ENST00000457038 527 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
NUP88Q99567 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.93■□□□□ 0.46
NUP88Q99567 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.93■□□□□ 0.46
NUP88Q99567 AL354718.3-201ENST00000616414 581 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 AC009542.2-202ENST00000619004 1067 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 CR382287.1-201ENST00000623954 586 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 AC148477.4-201ENST00000613430 1793 ntBASIC17.93■□□□□ 0.46
NUP88Q99567 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
NUP88Q99567 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NUP88Q99567 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.93■□□□□ 0.46
NUP88Q99567 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
NUP88Q99567 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.93■□□□□ 0.46
NUP88Q99567 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.92■□□□□ 0.46
NUP88Q99567 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
NUP88Q99567 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
NUP88Q99567 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 KLF2P2-201ENST00000416807 1039 ntBASIC17.92■□□□□ 0.46
NUP88Q99567 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.92■□□□□ 0.46
NUP88Q99567 AC022494.1-201ENST00000466044 728 ntBASIC17.92■□□□□ 0.46
NUP88Q99567 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.92■□□□□ 0.46
NUP88Q99567 KRT18P25-201ENST00000508931 1278 ntBASIC17.92■□□□□ 0.46
NUP88Q99567 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.92■□□□□ 0.46
NUP88Q99567 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 AC078819.1-201ENST00000547454 765 ntBASIC17.92■□□□□ 0.46
NUP88Q99567 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 AC012085.1-201ENST00000548270 765 ntBASIC17.92■□□□□ 0.46
NUP88Q99567 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.92■□□□□ 0.46
NUP88Q99567 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.92■□□□□ 0.46
NUP88Q99567 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NUP88Q99567 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
NUP88Q99567 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
NUP88Q99567 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
NUP88Q99567 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP88Q99567 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.91■□□□□ 0.46
NUP88Q99567 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.91■□□□□ 0.46
NUP88Q99567 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
NUP88Q99567 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.91■□□□□ 0.46
NUP88Q99567 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms