Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
USP28Q96RU2 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
USP28Q96RU2 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USP28Q96RU2 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP28Q96RU2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.52■□□□□ 0.4
USP28Q96RU2 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.52■□□□□ 0.4
USP28Q96RU2 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.52■□□□□ 0.4
USP28Q96RU2 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 BTBD7P1-201ENST00000447253 1453 ntBASIC17.52■□□□□ 0.4
USP28Q96RU2 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
USP28Q96RU2 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
USP28Q96RU2 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC17.52■□□□□ 0.4
USP28Q96RU2 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.52■□□□□ 0.4
USP28Q96RU2 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.52■□□□□ 0.4
USP28Q96RU2 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.52■□□□□ 0.4
USP28Q96RU2 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.52■□□□□ 0.4
USP28Q96RU2 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.52■□□□□ 0.4
USP28Q96RU2 IGHV3-42-201ENST00000520410 361 ntBASIC17.52■□□□□ 0.4
USP28Q96RU2 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.52■□□□□ 0.4
USP28Q96RU2 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.52■□□□□ 0.4
USP28Q96RU2 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.52■□□□□ 0.4
USP28Q96RU2 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 AC113367.3-201ENST00000508316 1912 ntBASIC17.52■□□□□ 0.4
USP28Q96RU2 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP28Q96RU2 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.39
USP28Q96RU2 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC17.52■□□□□ 0.39
USP28Q96RU2 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
USP28Q96RU2 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.52■□□□□ 0.39
USP28Q96RU2 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
USP28Q96RU2 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.51■□□□□ 0.39
USP28Q96RU2 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.51■□□□□ 0.39
USP28Q96RU2 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 AC068587.6-202ENST00000641839 5619 ntBASIC17.51■□□□□ 0.39
USP28Q96RU2 BX640514.1-201ENST00000583223 1918 ntBASIC17.51■□□□□ 0.39
USP28Q96RU2 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.51■□□□□ 0.39
USP28Q96RU2 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.51■□□□□ 0.39
USP28Q96RU2 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.51■□□□□ 0.39
USP28Q96RU2 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.51■□□□□ 0.39
USP28Q96RU2 METTL21AP1-201ENST00000438852 635 ntBASIC17.51■□□□□ 0.39
USP28Q96RU2 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.51■□□□□ 0.39
USP28Q96RU2 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.51■□□□□ 0.39
USP28Q96RU2 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
USP28Q96RU2 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.51■□□□□ 0.39
USP28Q96RU2 SRD5A3P1-201ENST00000603021 949 ntBASIC17.51■□□□□ 0.39
USP28Q96RU2 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
USP28Q96RU2 AC015656.1-201ENST00000624209 3578 ntBASIC17.51■□□□□ 0.39
USP28Q96RU2 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
USP28Q96RU2 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USP28Q96RU2 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.51■□□□□ 0.39
USP28Q96RU2 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.5■□□□□ 0.39
USP28Q96RU2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP28Q96RU2 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP28Q96RU2 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP28Q96RU2 KRT18P28-201ENST00000453838 1332 ntBASIC17.5■□□□□ 0.39
USP28Q96RU2 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP28Q96RU2 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP28Q96RU2 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
USP28Q96RU2 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms