Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 AC013726.1-201ENST00000563747 2285 ntBASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC50Q8IVM0 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 AC005840.4-201ENST00000541242 2494 ntBASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC50Q8IVM0 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 ZBED1P1-201ENST00000502364 1930 ntBASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 AC015656.1-201ENST00000624209 3578 ntBASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 SERBP1P3-201ENST00000459980 809 ntBASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 AP001059.3-201ENST00000619053 235 ntBASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC50Q8IVM0 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC50Q8IVM0 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms