Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.2□□□□□ -0.14
RNF4P78317 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.2□□□□□ -0.14
RNF4P78317 RNU1-114P-201ENST00000365297 166 ntBASIC14.2□□□□□ -0.14
RNF4P78317 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.2□□□□□ -0.14
RNF4P78317 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.2□□□□□ -0.14
RNF4P78317 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.2□□□□□ -0.14
RNF4P78317 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 KRT17P8-201ENST00000540749 863 ntBASIC14.2□□□□□ -0.14
RNF4P78317 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.2□□□□□ -0.14
RNF4P78317 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.2□□□□□ -0.14
RNF4P78317 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.2□□□□□ -0.14
RNF4P78317 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.2□□□□□ -0.14
RNF4P78317 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 PPT1-215ENST00000641471 2368 ntBASIC14.2□□□□□ -0.14
RNF4P78317 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
RNF4P78317 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.2□□□□□ -0.14
RNF4P78317 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RNF4P78317 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.2□□□□□ -0.14
RNF4P78317 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
RNF4P78317 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.19□□□□□ -0.14
RNF4P78317 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 KLF2P2-201ENST00000416807 1039 ntBASIC14.19□□□□□ -0.14
RNF4P78317 AC112492.5-201ENST00000421897 457 ntBASIC14.19□□□□□ -0.14
RNF4P78317 KRT43P-201ENST00000434019 910 ntBASIC14.19□□□□□ -0.14
RNF4P78317 BCRP2-202ENST00000447763 634 ntBASIC14.19□□□□□ -0.14
RNF4P78317 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.19□□□□□ -0.14
RNF4P78317 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.19□□□□□ -0.14
RNF4P78317 GPR53P-205ENST00000457298 1084 ntBASIC14.19□□□□□ -0.14
RNF4P78317 BCRP6-201ENST00000510112 632 ntBASIC14.19□□□□□ -0.14
RNF4P78317 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 BCRP7-201ENST00000511549 544 ntBASIC14.19□□□□□ -0.14
RNF4P78317 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.19□□□□□ -0.14
RNF4P78317 RAB43P1-201ENST00000561790 589 ntBASIC14.19□□□□□ -0.14
RNF4P78317 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.19□□□□□ -0.14
RNF4P78317 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
RNF4P78317 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms