Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.75□□□□□ -0.21
CLRN1P58418 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CLRN1P58418 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CLRN1P58418 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.75□□□□□ -0.21
CLRN1P58418 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 MROH4P-201ENST00000431302 1578 ntBASIC13.75□□□□□ -0.21
CLRN1P58418 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CLRN1P58418 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CLRN1P58418 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 AL589987.1-201ENST00000453380 819 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 INGX-202ENST00000489074 768 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 DOC2GP-202ENST00000514950 1163 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 TPRX2P-201ENST00000535362 881 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
CLRN1P58418 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.74□□□□□ -0.21
CLRN1P58418 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLRN1P58418 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CLRN1P58418 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.74□□□□□ -0.21
CLRN1P58418 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
CLRN1P58418 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.73□□□□□ -0.21
CLRN1P58418 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CLRN1P58418 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.73□□□□□ -0.21
CLRN1P58418 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CLRN1P58418 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CLRN1P58418 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.73□□□□□ -0.21
CLRN1P58418 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.73□□□□□ -0.21
CLRN1P58418 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.73□□□□□ -0.21
CLRN1P58418 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.73□□□□□ -0.21
CLRN1P58418 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.73□□□□□ -0.21
CLRN1P58418 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLRN1P58418 AQP6-203ENST00000551733 849 ntTSL 3 BASIC13.73□□□□□ -0.21
CLRN1P58418 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms