Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.5□□□□□ -0.09
RFX3P48380 FAM8A3P-201ENST00000427218 844 ntBASIC14.5□□□□□ -0.09
RFX3P48380 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.5□□□□□ -0.09
RFX3P48380 INGX-202ENST00000489074 768 ntBASIC14.5□□□□□ -0.09
RFX3P48380 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.5□□□□□ -0.09
RFX3P48380 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.5□□□□□ -0.09
RFX3P48380 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX3P48380 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
RFX3P48380 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
RFX3P48380 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
RFX3P48380 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 AC091951.1-201ENST00000512854 2465 ntBASIC14.49□□□□□ -0.09
RFX3P48380 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.49□□□□□ -0.09
RFX3P48380 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 MIR770-201ENST00000390219 98 ntBASIC14.49□□□□□ -0.09
RFX3P48380 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.49□□□□□ -0.09
RFX3P48380 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 AC015922.1-201ENST00000421102 1152 ntBASIC14.49□□□□□ -0.09
RFX3P48380 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.49□□□□□ -0.09
RFX3P48380 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
RFX3P48380 AC008738.7-201ENST00000609744 511 ntBASIC14.49□□□□□ -0.09
RFX3P48380 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.49□□□□□ -0.09
RFX3P48380 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX3P48380 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX3P48380 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX3P48380 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
RFX3P48380 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms