Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 MST1L-201ENST00000442552 2185 ntBASIC16.72■□□□□ 0.27
RFX1P22670 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.72■□□□□ 0.27
RFX1P22670 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
RFX1P22670 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.72■□□□□ 0.27
RFX1P22670 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
RFX1P22670 BRWD1P1-201ENST00000401091 371 ntBASIC16.72■□□□□ 0.27
RFX1P22670 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.72■□□□□ 0.27
RFX1P22670 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.72■□□□□ 0.27
RFX1P22670 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.72■□□□□ 0.27
RFX1P22670 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 AC114501.2-201ENST00000439631 535 ntBASIC16.72■□□□□ 0.27
RFX1P22670 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.72■□□□□ 0.27
RFX1P22670 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RFX1P22670 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.72■□□□□ 0.27
RFX1P22670 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
RFX1P22670 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.72■□□□□ 0.27
RFX1P22670 AC092337.1-201ENST00000568699 1129 ntBASIC16.72■□□□□ 0.27
RFX1P22670 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX1P22670 AC013726.1-201ENST00000563747 2285 ntBASIC16.72■□□□□ 0.27
RFX1P22670 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
RFX1P22670 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX1P22670 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.72■□□□□ 0.27
RFX1P22670 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 CICP11-201ENST00000434745 2827 ntBASIC16.71■□□□□ 0.27
RFX1P22670 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.71■□□□□ 0.27
RFX1P22670 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 AC011270.2-201ENST00000624293 2550 ntBASIC16.71■□□□□ 0.27
RFX1P22670 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RFX1P22670 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.71■□□□□ 0.27
RFX1P22670 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RFX1P22670 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
RFX1P22670 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.71■□□□□ 0.27
RFX1P22670 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RFX1P22670 ELK1P1-201ENST00000485699 580 ntBASIC16.71■□□□□ 0.27
RFX1P22670 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.71■□□□□ 0.27
RFX1P22670 AC015936.2-201ENST00000593177 259 ntBASIC16.71■□□□□ 0.27
RFX1P22670 AC025181.2-201ENST00000606994 802 ntBASIC16.71■□□□□ 0.27
RFX1P22670 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.71■□□□□ 0.27
RFX1P22670 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFX1P22670 AC063926.3-201ENST00000624734 5658 ntBASIC16.71■□□□□ 0.27
RFX1P22670 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RFX1P22670 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.71■□□□□ 0.27
RFX1P22670 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms