Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 REXO1L4P-201ENST00000605109 1937 ntBASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AC100757.3-201ENST00000622361 1406 ntBASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 RPL28-205ENST00000558131 444 ntTSL 5 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AC023511.2-201ENST00000618803 211 ntBASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AC004461.2-201ENST00000629517 803 ntBASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIF3AQ9Y2N7 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
HIF3AQ9Y2N7 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.9□□□□□ -0.19
HIF3AQ9Y2N7 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.9□□□□□ -0.19
HIF3AQ9Y2N7 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
HIF3AQ9Y2N7 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.9□□□□□ -0.19
HIF3AQ9Y2N7 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AC114501.2-201ENST00000439631 535 ntBASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIF3AQ9Y2N7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms