Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 ACTG1P3-201ENST00000431775 1114 ntBASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AC007389.4-201ENST00000454674 793 ntBASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 GIMAP3P-201ENST00000495150 836 ntBASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 AC010319.3-201ENST00000597028 470 ntBASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 IGHV3-72-202ENST00000621503 303 ntBASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TRIM39Q9HCM9 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 AC099063.4-201ENST00000641099 1602 ntBASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM39Q9HCM9 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 AC067930.6-201ENST00000623257 4947 ntBASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 TMBIM7P-203ENST00000641617 1718 ntBASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 AL161772.1-201ENST00000610494 4412 ntBASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM39Q9HCM9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 AC073347.1-201ENST00000421633 2643 ntBASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM39Q9HCM9 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms