Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 MIR663B-201ENST00000408361 115 ntBASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 HIST2H2BB-201ENST00000449108 381 ntBASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 KRT8P13-201ENST00000463294 1010 ntBASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 AP001258.2-201ENST00000529891 490 ntBASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 AL139099.5-201ENST00000635274 300 ntBASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PAAF1Q9BRP4 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AC023024.2-201ENST00000623561 1993 ntBASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 CHMP1AP1-201ENST00000445563 662 ntBASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 MESTP3-201ENST00000503460 968 ntBASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AL603764.1-201ENST00000636452 321 ntBASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PAAF1Q9BRP4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 FTLP10-202ENST00000505798 471 ntBASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 MIR4683-201ENST00000579659 81 ntBASIC16.21■□□□□ 0.19
PAAF1Q9BRP4 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms