Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VRK1Q99986 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VRK1Q99986 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
VRK1Q99986 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VRK1Q99986 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VRK1Q99986 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VRK1Q99986 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.67□□□□□ -0.22
VRK1Q99986 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.66□□□□□ -0.22
VRK1Q99986 CYP4F24P-201ENST00000586049 1580 ntBASIC13.66□□□□□ -0.22
VRK1Q99986 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 AL592424.1-201ENST00000563624 1536 ntBASIC13.66□□□□□ -0.22
VRK1Q99986 LINC01101-201ENST00000622953 1884 ntBASIC13.66□□□□□ -0.22
VRK1Q99986 AC020658.6-201ENST00000623564 1870 ntBASIC13.66□□□□□ -0.22
VRK1Q99986 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
VRK1Q99986 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
VRK1Q99986 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 AL353779.1-201ENST00000434793 351 ntBASIC13.66□□□□□ -0.22
VRK1Q99986 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.66□□□□□ -0.22
VRK1Q99986 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.66□□□□□ -0.22
VRK1Q99986 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.66□□□□□ -0.22
VRK1Q99986 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.66□□□□□ -0.22
VRK1Q99986 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.66□□□□□ -0.22
VRK1Q99986 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.66□□□□□ -0.22
VRK1Q99986 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
VRK1Q99986 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
VRK1Q99986 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
VRK1Q99986 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VRK1Q99986 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.66□□□□□ -0.22
VRK1Q99986 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.65□□□□□ -0.22
VRK1Q99986 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 CALY-202ENST00000368555 783 ntTSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 AC087499.6-201ENST00000411576 835 ntBASIC13.65□□□□□ -0.22
VRK1Q99986 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.65□□□□□ -0.22
VRK1Q99986 ZNF890P-202ENST00000530367 1156 ntBASIC13.65□□□□□ -0.22
VRK1Q99986 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 AC243562.2-201ENST00000561247 970 ntBASIC13.65□□□□□ -0.22
VRK1Q99986 SPDYE22P-201ENST00000582158 798 ntBASIC13.65□□□□□ -0.22
VRK1Q99986 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.65□□□□□ -0.22
VRK1Q99986 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.65□□□□□ -0.22
VRK1Q99986 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.65□□□□□ -0.22
VRK1Q99986 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC13.65□□□□□ -0.22
VRK1Q99986 AC007191.1-201ENST00000623179 2995 ntBASIC13.65□□□□□ -0.22
VRK1Q99986 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VRK1Q99986 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.65□□□□□ -0.22
VRK1Q99986 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms