Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 RARRES2P5-201ENST00000564013 466 ntBASIC13.66□□□□□ -0.22
SKA3Q8IX90 MIR4745-201ENST00000577608 62 ntBASIC13.66□□□□□ -0.22
SKA3Q8IX90 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 AL391069.4-201ENST00000609583 481 ntBASIC13.66□□□□□ -0.22
SKA3Q8IX90 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 CLK3P2-201ENST00000427566 1453 ntBASIC13.66□□□□□ -0.22
SKA3Q8IX90 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 AC236430.1-201ENST00000402231 743 ntBASIC13.65□□□□□ -0.22
SKA3Q8IX90 RPL5P21-201ENST00000404620 815 ntBASIC13.65□□□□□ -0.22
SKA3Q8IX90 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 AC002472.2-201ENST00000442739 958 ntBASIC13.65□□□□□ -0.22
SKA3Q8IX90 FAM207CP-201ENST00000443486 507 ntBASIC13.65□□□□□ -0.22
SKA3Q8IX90 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 AC008761.3-201ENST00000624803 892 ntBASIC13.65□□□□□ -0.22
SKA3Q8IX90 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.65□□□□□ -0.22
SKA3Q8IX90 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SKA3Q8IX90 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
SKA3Q8IX90 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
SKA3Q8IX90 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms