Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CCDC144BQ3MJ40 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC144BQ3MJ40 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC144BQ3MJ40 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 CSF2RBP1-201ENST00000447905 391 ntBASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 RPL13AP25-201ENST00000484130 612 ntBASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 AC120045.2-201ENST00000567334 178 ntBASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC144BQ3MJ40 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 REXO1L1P-202ENST00000608646 1974 ntBASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 AC139749.1-202ENST00000617529 3139 ntBASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 RN7SL219P-201ENST00000582872 296 ntBASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 CICP4-201ENST00000447359 2812 ntBASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 LINC01101-201ENST00000622953 1884 ntBASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 AP001282.1-201ENST00000531301 1499 ntBASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC144BQ3MJ40 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms