Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
RPL39P62891 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
RPL39P62891 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
RPL39P62891 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 AL137784.3-201ENST00000623858 2288 ntBASIC10.92□□□□□ -0.66
RPL39P62891 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
RPL39P62891 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC10.92□□□□□ -0.66
RPL39P62891 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
RPL39P62891 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
RPL39P62891 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC10.92□□□□□ -0.66
RPL39P62891 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC10.91□□□□□ -0.66
RPL39P62891 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 BSG-215ENST00000618006 1329 ntTSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC10.91□□□□□ -0.66
RPL39P62891 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
RPL39P62891 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
RPL39P62891 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC10.91□□□□□ -0.66
RPL39P62891 SDHD-206ENST00000528182 754 ntTSL 3 BASIC10.91□□□□□ -0.66
RPL39P62891 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC10.91□□□□□ -0.66
RPL39P62891 AC012313.10-201ENST00000623509 926 ntBASIC10.91□□□□□ -0.66
RPL39P62891 AC004877.2-201ENST00000623941 599 ntBASIC10.91□□□□□ -0.66
RPL39P62891 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
RPL39P62891 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RPL39P62891 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
RPL39P62891 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.66
RPL39P62891 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
RPL39P62891 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
RPL39P62891 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC10.9□□□□□ -0.66
RPL39P62891 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC10.9□□□□□ -0.66
RPL39P62891 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC10.9□□□□□ -0.66
RPL39P62891 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms