Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC025181.2-201ENST00000606994 802 ntBASIC14.96□□□□□ -0.01
HNF4AP41235 AJ011932.1-201ENST00000621707 465 ntBASIC14.96□□□□□ -0.01
HNF4AP41235 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.96□□□□□ -0.02
HNF4AP41235 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.96□□□□□ -0.02
HNF4AP41235 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
HNF4AP41235 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
HNF4AP41235 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HNF4AP41235 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.95□□□□□ -0.02
HNF4AP41235 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HNF4AP41235 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 SPDYE19P-201ENST00000338590 713 ntBASIC14.95□□□□□ -0.02
HNF4AP41235 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.95□□□□□ -0.02
HNF4AP41235 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.95□□□□□ -0.02
HNF4AP41235 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.95□□□□□ -0.02
HNF4AP41235 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.95□□□□□ -0.02
HNF4AP41235 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.95□□□□□ -0.02
HNF4AP41235 SRD5A3P1-201ENST00000603021 949 ntBASIC14.95□□□□□ -0.02
HNF4AP41235 AL096865.1-201ENST00000606796 927 ntBASIC14.95□□□□□ -0.02
HNF4AP41235 AC004790.1-201ENST00000612686 536 ntBASIC14.95□□□□□ -0.02
HNF4AP41235 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
HNF4AP41235 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
HNF4AP41235 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
HNF4AP41235 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HNF4AP41235 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ZBED1P1-201ENST00000502364 1930 ntBASIC14.95□□□□□ -0.02
HNF4AP41235 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
HNF4AP41235 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HNF4AP41235 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
HNF4AP41235 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.94□□□□□ -0.02
HNF4AP41235 SERBP1P5-201ENST00000510079 1181 ntBASIC14.94□□□□□ -0.02
HNF4AP41235 DOC2GP-202ENST00000514950 1163 ntBASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms