Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.92□□□□□ -0.02
TNFP01375 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 CICP11-201ENST00000434745 2827 ntBASIC14.92□□□□□ -0.02
TNFP01375 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TNFP01375 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TNFP01375 GHSR-202ENST00000427970 912 ntBASIC14.92□□□□□ -0.02
TNFP01375 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.92□□□□□ -0.02
TNFP01375 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.92□□□□□ -0.02
TNFP01375 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.92□□□□□ -0.02
TNFP01375 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 AC055811.4-201ENST00000624039 1754 ntBASIC14.92□□□□□ -0.02
TNFP01375 REXO1L5P-201ENST00000622260 2098 ntBASIC14.92□□□□□ -0.02
TNFP01375 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TNFP01375 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.92□□□□□ -0.02
TNFP01375 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.92□□□□□ -0.02
TNFP01375 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TNFP01375 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TNFP01375 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TNFP01375 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TNFP01375 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TNFP01375 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TNFP01375 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 AC008894.3-201ENST00000624324 3103 ntBASIC14.91□□□□□ -0.02
TNFP01375 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TNFP01375 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
TNFP01375 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
TNFP01375 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
TNFP01375 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.91□□□□□ -0.02
TNFP01375 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TNFP01375 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
TNFP01375 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
TNFP01375 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TNFP01375 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms