Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 AC012508.2-201ENST00000567613 1472 ntBASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HIF3AQ9Y2N7 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 AC007292.2-201ENST00000593524 1812 ntBASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 AC106881.1-201ENST00000605849 3329 ntBASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 AL390755.1-201ENST00000623716 2027 ntBASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HIF3AQ9Y2N7 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 FAM86GP-201ENST00000448322 971 ntBASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 AC097493.3-201ENST00000509725 367 ntBASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 AC044860.1-202ENST00000559481 777 ntBASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 AC092337.1-201ENST00000568699 1129 ntBASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 AP001160.2-201ENST00000596071 487 ntBASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.91□□□□□ -0.18
HIF3AQ9Y2N7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms