Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 GAPDHP40-201ENST00000505218 1006 ntBASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 KRT18P25-201ENST00000508931 1278 ntBASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AC084346.2-201ENST00000607097 949 ntBASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AP005019.2-201ENST00000615104 511 ntBASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AC069224.1-201ENST00000566372 1715 ntBASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AC063926.3-201ENST00000624734 5658 ntBASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TM9SF3Q9HD45 AC006058.4-201ENST00000624016 1670 ntBASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 AC013268.4-201ENST00000637413 2228 ntBASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 FAM197Y7-201ENST00000432892 766 ntBASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.38■□□□□ 0.05
TM9SF3Q9HD45 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms